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glyph - A Next-Generation Grammar of Interactive Graphics

A modern visualization grammar that treats interactivity, animation, and composable layouts as first-class concepts rather than afterthoughts. Designed to address key limitations of existing grammars: native hover, click, and zoom events, built-in multi-plot composition, and a token-based theming system. Renders interactive HTML widgets via 'D3.js' from a single declarative specification.

Last updated

5.73 score 15 stars 12 scripts 348 downloads

ggvariant - Tidy, 'ggplot2'-Native Visualization for Genomic Variants

A simple, opinionated toolkit for visualizing genomic variant data using a 'ggplot2'-native grammar. Accepts VCF files or plain data frames and produces lollipop plots, consequence summaries, mutational spectrum charts, and cohort-level comparisons as standard 'ggplot2' objects. Designed for both wet-lab biologists and experienced bioinformaticians.

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genomicsggplot2variant-visualizationvcf

5.18 score 10 stars 7 scripts 334 downloads

brapiR2 - A Tidyverse-Native Client for the 'BrAPI' v2 (Breeding API) Specification

Provides pipe-friendly, stateless read access to the Breeding API ('BrAPI') v2.1 specification, an open community standard for plant breeding data interchange maintained by the BrAPI project <https://brapi.org>. Wraps 32 of the 37 'BrAPI' v2.1 entities across all four modules, Core, Germplasm, Phenotyping, and Genotyping, covering 49 of the specification's 138 retrieval ('GET' and search) endpoints and returning tidy tibbles ready for analysis. Write and update endpoints are out of scope by design. Features include automatic pagination, async search handling, response caching, parallel batch fetching, and convenience functions for genomic selection workflows (e.g. dosage matrix extraction). Designed for plant breeders and bioinformaticians who need programmatic access to plant breeding databases that implement the 'BrAPI' v2 specification.

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brapibreeding-apigenomicsplant-breedingtidyverse

3.60 score 1 stars